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- Yi-Fan Chou
Thank you Sheila and Geraldine for the prompt reply. @Geraldine, Thank you for the clarification. The reason I wanted to filter this way is because I wanted to check the effect varying the minimum of number of reads will have on the number of varian…
Thank you Geraldine. I couldn't think of any reason why that would be either and that is why I wanted to check with you guys.
Dear Sheila, I have one more question regarding the best practices. I saw in this document, in page 37(https://wiki.uiowa.edu/download/attachments/80413422/Lecture_20120802_Altmann_MPS_SNPcall.pdf?version=1&modificationDate=1343922690093) that …
Ok. Thanks Sheila. I will not do that in the future, sorry about that.
Dear Carneiro, when it comes to pooled samples, is there any other recommended way that is able to differentiate between PCR duplicates and the real fragments?
Thank you Sheila. When it comes to pooled samples, is there any other recommended way that is able to differentiate between PCR duplicates and the real fragments