Bianca_T

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Username
Bianca_T
Location
Stockholm
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Location
Stockholm
Full Name
Bianca Tesi

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  • Hi! I would like to phase my vcf generated with Ion Torrent Variant Caller using PhaseByTransmission, but the phasing is actually not happening. This is my command (running GATK 3.2): java -Xmx8g -jar /home/bianca/bin/GenomeAnalysisTK.jar \-R $REF…
  • Hi, I am working with a dataset from Ion Torrent (Ampliseq targeted resequencing on human samples). I have called the variants with HC (GATK 2.7.2) and would like now to apply hard filters. Seen the different kind of sequencing errors produced by I…