Attention: Want an end-to-end pipelining solution for GATK Best Practices?
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Hi, downloaded the nightly build. To best of my understanding, I still suffer from the same error. java -Xmx5g -Djava.io.tmpdir=./tmp -jar GenomeAnalysisTK.jar -T LeftAlignAndTrimVariants -R homo_sapiens_82.fa --variant vcf/31-03-15-EN.final.vcf…
Dear Shlee, what is the status of the fix. Tried to check that out already from your bug tracker, but without a great success.