agr_lab_nbrc

Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/jobdir/015/129/15129530/_galaxy_tmp -Xmx15872m -Xms256m [Fri Feb 24 10:12:32 CST 2017] net.sf.picard.sam.CreateSequenceDictionary REFERENCE=/galaxy-repl/main/jobdir/015/129/15129530/_galaxy_tmp/tmp-gatk-aGAWJD/gatk_input.fasta OUTPUT=/galaxy-repl/main/jobdir/015/129/15129530/_galaxy_tmp/tmp-gatk-aGAWJD/dict7762336907034131389.tmp TRUNCATE_NAMES_AT_WHITESPACE=true NUM_SEQUENCES=2147483647 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false [Fri Feb 24 10:12:59 CST 2017] Executing as [email protected] on Linux 2.6.32-504.8.1.el6.x86_64 amd64; Java HotSpot(TM) 64-Bit Server VM 1.7.0_40-b43; Picard version: 1.58(1057) [Fri Feb 24 10:13:03 CST 2017] net.sf.picard.sam.CreateSequenceDictionary done. Elapsed time: 0.53 minutes. Runtime.totalMemory()=754450432 ERROR -----------------------------------------------------

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agr_lab_nbrc
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worm lab

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