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- Member, Administrator, Broadie
I try to run GATK4 Somatic CNV call wdl pipeline ,which published on github, but is the latest wdl file for somatic CNV test work ? I try to run it with my own interval but it seems I should use same interval file for tumor and normal but in the wdl ,it would use **PreprocessInterval **to preprocess the interval file for tumor ,what I can do to elude this problem ？
is there any requirement on self-made interval file ?
Thx a lotJuly 13