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1000g

GRCh37/hg19: should I re-process my BAMs?

Accepted Answer 2.2K views 23 comments 0 points Most recent by yfarjoun June 2018Ask the GATK team
1000G Indels for BaseRecalibrator

Answered 91 views 1 comment 0 points Most recent by Sheila November 2016Ask the GATK team
Is there a gvcf file from 1000 genomes to run a joint call?

Answered 341 views 4 comments 0 points Most recent by paleogenomics July 2016Ask the GATK team
How can I get these data sets used in VQSR ?

Answered 399 views 1 comment 0 points Most recent by tommycarstensen February 2015Ask the GATK team
VQSR with few exomes: Importance of read length and/or depth when selecting 1000g-samples to add?

296 views 2 comments 0 points Most recent by adalgeir September 2014Ask the GATK team
RealignerTargetCreator parameter -known [File] fails when creating .idx file.

Accepted Answer 695 views 4 comments 0 points Most recent by Geraldine_VdAuwera April 2014Ask the GATK team