1000g

Discussion List

• GRCh37/hg19: should I re-process my BAMs?

  Accepted Answer 2.9K views 23 comments 0 points Most recent by yfarjoun June 2018Ask the GATK team
• 1000G Indels for BaseRecalibrator

  Answered 141 views 1 comment 0 points Most recent by Sheila November 2016Ask the GATK team
• Is there a gvcf file from 1000 genomes to run a joint call?

  Answered 432 views 4 comments 0 points Most recent by paleogenomics July 2016Ask the GATK team
• How can I get these data sets used in VQSR ?

  Answered 466 views 1 comment 0 points Most recent by tommycarstensen February 2015Ask the GATK team
• VQSR with few exomes: Importance of read length and/or depth when selecting 1000g-samples to add?

  326 views 2 comments 0 points Most recent by adalgeir September 2014Ask the GATK team
• RealignerTargetCreator parameter -known [File] fails when creating .idx file.

  Accepted Answer 755 views 4 comments 0 points Most recent by Geraldine_VdAuwera April 2014Ask the GATK team