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problem in UnifiedGenotyper

mahyarheymahyarhey BostonMember
edited October 2013 in Ask the GATK team

I run the UnifiedGenotyper with 3 samples. After almost 4 hours I got the following ERROR. What is this error mean? How I can to fix the problem? Thanks

ERROR ------------------------------------------------------------------------------------------
ERROR A GATK RUNTIME ERROR has occurred (version 2.2-4-g4a174fb):
ERROR Please visit the wiki to see if this is a known problem
ERROR If not, please post the error, with stack trace, to the GATK forum
ERROR Visit our website and forum for extensive documentation and answers to
ERROR commonly asked questions http://www.broadinstitute.org/gatk
ERROR MESSAGE: -1 does not represent a valid base character
Post edited by Geraldine_VdAuwera on


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