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We will be out of the office on October 14, 2019, due to the U.S. holiday. We will return to monitoring the forum on October 15.
Does the walker DepthOfCoverage support multi-threading?
According to the documentation:
"This tool can be run in multi-threaded mode using this option. TreeReducible (-nt)"
When I try with GATK2.5 I get this error message:
"Invalid command line: Argument nt has a bad value: The analysis DepthOfCoverage aggregates results by interval. Due to a current limitation of the GATK, analyses of this type do not currently support parallel execution. Please run your analysis without the -nt option."
Would it work, if I upgraded to 2.7? You upgrade GATK more frequently than I change my under wear, so it is difficult to keep up Thanks!