Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Queue and LSF versions
This is not a question, per se - I suppose it's more of an observation.
We recently upgraded LSF on one of our clusters to v9.0.1, and quickly discovered that Queue can't submit jobs. The reaction was rather violent - the entire JVM crashed, and the stack trace showed it dying in lsb_submit(). We downgraded LSF to v8.3.0, and everything is working fine (so far).
I know Queue is compiled against the LSF v7.0.6 API, it would appear that it's not binary-compatible with LSF 9.x.
Hope this helps others in the future...