If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Use GATK R Library (gsalib), how to build?
Does anyone use GATK R Library (gsalib)? I follow the guide at this link (http://gatkforums.broadinstitute.org/discussion/1244/what-is-a-gatkreport), when I type "ant gsalib" in my linux system with Java 1.6, the building failed. Here is the error message.
5:00pm [email protected] /bit/data01/projects/prod_scripts/GATK/gatk-master $ ant gsalib Buildfile: build.xml
BUILD FAILED /bit/data01/projects/prod_scripts/GATK/gatk-master/build.xml:184: The type doesn't support the "erroronmissingdir" attribute.
Can anyone know what is wrong here?