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Typical requirements for StructuralVariationDiscoveryPipelineSpark for local execution?
I have a bunch of human whole genome samples at 30X coverage that I want to perform SV analysis. I am already using some other tools but I wanted to give GATK StructuralVariationDiscoveryPipelineSpark a go for its time. I managed to gather all the necessary resources however my initial execution failed due to java heap space error at stage 7 (Used local and did not play around with any heap space parameters on a 64gb machine ). So I am wondering what would be a typical requirement for this workflow and what do broad testers suggest? I have currently 2 computers vacant one with 128gb memory and another with 64 gb of memory.