Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Maximum number of files with GATK CombineVariants ?
We are trying to merge 8614 VCF files using CombineVariants and it's failing with this error on file ~4020ish of our list of 8614.
ERROR MESSAGE: Unable to create BasicFeatureReader using feature file , for input source: /xchip/
Is there a limit to the number of files mergeable with this tool? Can we get around this?