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How to use multiple inputs in MarkDuplicatesSpark

Dear GATK team, the possibility to use multiple inputs in MarkDuplicatesSpark has recently been added.
However I do not fully understand how to define it on the command line as I have not found examples.

With the picard MarkDuplicates you specifies multiple -I options. But in the documentation of MarkDuplicatesSpark the --input option is noted as a List[string] type, how does it work?

By the way, do you have documentation somewhere listing all the variable types with examples? this would be very helpful.

Thanks for your help.

Best Answer


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