Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I have tried to solve several issues which came up while trying to run the HaplotypeCaller. For this one, I didn't find anything on google and to be honest when pasting the error, google doesn't even find something similar.
ERROR MESSAGE: Badly formed genome loc: Contig NC_007605 given as location, but this contig isn't present in the Fasta sequence dictionary
Can anyone please tell me what's the problem here? The fasta file I got was the one downloaded from the bundle: human_g1k_v37.fasta.gz
Any help would be really appreciated. Thank you!!