We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I followed the instructions on the following page to install gsalib:
It is a very detail one. However, after I git clone the repository "gate-protected" (the source-code under download page point to this git repository) and type "ant gsalib" inside,it gives error information:
[taskdef] Could not load definitions from resource cloverlib.xml. It could not be found.
[exec] * installing to library ‘/Users/yingsh/home/github/gatk-protected/public/R/src/org/broadinstitute/sting/utils/R/gsalib’
[exec] * installing source package ‘gsalib’ ...
[exec] ERROR: a 'NAMESPACE' file is required
[exec] * removing ‘/Users/yingsh/home/github/gatk-protected/public/R/src/org/broadinstitute/sting/utils/R/gsalib/gsalib’
/Users/yingsh/home/github/gatk-protected/build.xml:1052: exec returned: 1
Total time: 4 seconds
Could you help me to fix this?