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TCGA WGS PoN for CNV
I would like to use a whole genome sequencing TCGA panel of normals for the GATK CNV workflow. I have dbGaP access and can use the controlled access TCGA workspaces. So I was wondering if of such a PoN exist somewhere already or if this is something I have to create with the CNV_Somatic_Panel workflow. I think there are about 1000 WGS normals I could use from the controlled access TCGA workspaces. If I use the CNV_Somatic_Panel workflow do I have to go up on memory in the configuration to process that many samples? What would be good parameters?