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minor error in the documentation regarding --genotyping-mode

tommycarstensentommycarstensen United KingdomMember ✭✭✭

Hi GATK team,

I just wanted to let you know, that there is a minor mistake in the documentation here:
https://software.broadinstitute.org/gatk/documentation/tooldocs/4.1.0.0/org_broadinstitute_hellbender_tools_walkers_haplotypecaller_HaplotypeCaller.php#--pcr-indel-model

The file in which you want to replace --genotyping_mode with --genotyping-mode is this one:
gatk/src/main/java/org/broadinstitute/hellbender/tools/walkers/genotyper/StandardCallerArgumentCollection.java

I don't seem to be able to create a pull request, so I'll leave it to you.

Thanks,
Tommy

Issue · Github
by shlee

Issue Number
5657
State
closed
Last Updated
Assignee
Array
Closed By
sooheelee

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