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UmiAwareMarkDuplicatesWithMateCigar between Picard 2.9.0 and 2.18.9

Hi,

My institution is moving the HPC servers, and as a side effect causes a small downgrade of Picard, from 2.18.9 to 2.9.0. I have followed the release notes and there seems to have no algorithm changes between these two versions aside from the metrics output. Can the GATK team please confirm that's the case? Thanks!

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Answers

  • AdelaideRAdelaideR Unconfirmed, Member, Broadie, Moderator admin

    @johnma How did this solution work out for you? This ticket will now be closed but as always, feel free to reach out again with any follow-up questions! You can respond here with follow-up questions.

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