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Query about wgs_calling_regions.hg38.interval_list from GRCh38 gatk bundle

Hi GATK team,

We are using wgs_calling_regions.hg38.interval_list from gatk bundle to call variants. Could you please confirm the details about the removed/masked regions from the reference.
Particularly we would like to know about centromere regions inclusion. Thanks.


Best Answer


  • LavanyaLavanya Member

    Thanks Bhanu.

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