We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

How to get best performance in Merging 6K samples using CombineGVCFs and GenotypeGVCFs (GATK 4.0.9)

I am looking for the right practices in merging 6K samples using CombineGVCFs and GenotypeGVCFs to get the best performance. I don't see Spark appended Suffix for these, does that mean these methods can't make use of spark?

I also came across some old threads on plans in bringing tileDB in 4.0 version, which could improve the performance. How can I make use of tileDB?

PS: I generated the gvcfs using HaplotypeCallerSpark in gatk4

Answers

Sign In or Register to comment.