Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Difference between Genotype GVCFs and CombineGVCFs
I would like to be sure of the difference between those 2 tools.
From what I understand, GenotypeGVCFs somehow re-calculate likelihood and parameters (QUAL, DP, MQ...) for each variant positions present in at least 1 input sample. Right ? And is it not the case for CombineGVCFs?
Thank you for your help,