The frontline support team will be slow on the forum because we are occupied with the GATK Workshop on March 21st and 22nd 2019. We will be back and more available to answer questions on the forum on March 25th 2019.
high RAM memory usage GATK-2.4-3
I have started GATK-2.4-3 and have noticed that each tools makes use of a lot of RAM memory. I am talking of about 30 GB per run using
-T ReduceReads for some files. I have an initial 400 million reads per input, before marking duplicates.
Is there something different in GATK-2.4-3 in comparison to the previous version?
I didn't this problem when using GATK-2.3-9.