If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Dear GATK team,
I am currently working for a project in which we want to use mutect2 as variant caller for FFPE samples. Unfortunately, the manual page of the tool states its beta-status and notes that it is not recommended to use the tool in production.
As I expect reviewers complaining about this issue I was wandering when mutect2 will get a (stable) release status.