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2d CNNScoreVariants Python Exception

Any suggestions for this error running the 2d model? The 1d model is running fine.

Running:
    java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -DGATK_STACKTRACE_ON_USER_EXCEPTION=true -jar /share/pkg/gatk/4.0.7.0/install/bin/gatk-package-4.0.7.0-local.jar CNNScoreVariants -I bam/CHM1_1/CHM1_1.sorted.md.recal.bam -V vcf/CHM1_1.raw.snps.indels.vcf.gz -R /restricted/projectnb/casa/ref/GRCh38_full_analysis_set_plus_decoy_hla.fa -O cnn2d/CHM1_1.raw.snps.indels.vcf.gz -tensor-type read_tensor
21:30:39.406 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/share/pkg/gatk/4.0.7.0/install/bin/gatk-package-4.0.7.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
21:30:39.551 INFO  CNNScoreVariants - ------------------------------------------------------------
21:30:39.551 INFO  CNNScoreVariants - The Genome Analysis Toolkit (GATK) v4.0.7.0
21:30:39.551 INFO  CNNScoreVariants - For support and documentation go to https://software.broadinstitute.org/gatk/
21:30:39.551 INFO  CNNScoreVariants - Executing as [email protected] on Linux v2.6.32-696.28.1.el6.x86_64 amd64
21:30:39.551 INFO  CNNScoreVariants - Java runtime: Java HotSpot(TM) 64-Bit Server VM v1.8.0_151-b12
21:30:39.552 INFO  CNNScoreVariants - Start Date/Time: August 12, 2018 9:30:39 PM EDT
21:30:39.552 INFO  CNNScoreVariants - ------------------------------------------------------------
21:30:39.552 INFO  CNNScoreVariants - ------------------------------------------------------------
21:30:39.552 INFO  CNNScoreVariants - HTSJDK Version: 2.16.0
21:30:39.552 INFO  CNNScoreVariants - Picard Version: 2.18.7
21:30:39.552 INFO  CNNScoreVariants - HTSJDK Defaults.COMPRESSION_LEVEL : 2
21:30:39.553 INFO  CNNScoreVariants - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
21:30:39.553 INFO  CNNScoreVariants - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
21:30:39.553 INFO  CNNScoreVariants - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
21:30:39.553 INFO  CNNScoreVariants - Deflater: IntelDeflater
21:30:39.553 INFO  CNNScoreVariants - Inflater: IntelInflater
21:30:39.553 INFO  CNNScoreVariants - GCS max retries/reopens: 20
21:30:39.553 INFO  CNNScoreVariants - Using google-cloud-java patch 6d11bef1c81f885c26b2b56c8616b7a705171e4f from https://github.com/droazen/google-cloud-java/tree/dr_all_nio_fixes
21:30:39.553 WARN  CNNScoreVariants -

   !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

   Warning: CNNScoreVariants is an EXPERIMENTAL tool and should not be used for production

   !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!


21:30:39.553 INFO  CNNScoreVariants - Initializing engine
21:30:40.390 INFO  FeatureManager - Using codec VCFCodec to read file file:///restricted/projectnb/casa/wgs.hg38/sv/gatk.cnn/vcf/CHM1_1.raw.snps.indels.vcf.gz
21:30:40.803 INFO  CNNScoreVariants - Done initializing engine
21:30:42.257 INFO  CNNScoreVariants - Shutting down engine
[August 12, 2018 9:30:42 PM EDT] org.broadinstitute.hellbender.tools.walkers.vqsr.CNNScoreVariants done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=966262784
org.broadinstitute.hellbender.utils.python.c: A nack was received from the Python process (most likely caused by a raised exception caused by): [email protected]c2
        at org.broadinstitute.hellbender.utils.python.StreamingPythonScriptExecutor.waitForAck(StreamingPythonScriptExecutor.java:206)
        at org.broadinstitute.hellbender.utils.python.StreamingPythonScriptExecutor.sendSynchronousCommand(StreamingPythonScriptExecutor.java:167)
        at org.broadinstitute.hellbender.tools.walkers.vqsr.CNNScoreVariants.onTraversalStart(CNNScoreVariants.java:247)
        at org.broadinstitute.hellbender.engine.GATKTool.doWork(GATKTool.java:977)
        at org.broadinstitute.hellbender.cmdline.CommandLineProgram.runTool(CommandLineProgram.java:137)
        at org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMainPostParseArgs(CommandLineProgram.java:182)
        at org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:201)
        at org.broadinstitute.hellbender.Main.runCommandLineProgram(Main.java:160)
        at org.broadinstitute.hellbender.Main.mainEntry(Main.java:203)
        at org.broadinstitute.hellbender.Main.main(Main.java:289)

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