Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
how to extract unique variants from GVCF?
I have a GVCF (generated using HaplotypeCaller -ERC GVCF) of 36 samples and would like to determine the (potentially de novo) variants that are unique to each sample. Short of creating 36 N-1 GVCFs for discordance testing, or individual sample VCFs for subtraction, is there a straightforward method to obtain the desired information?