We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

GATK 4 VariantRecalibrator example using unavailable option: --recal-file

cr517cr517 CambridgeMember

Hi,

On this page: https://software.broadinstitute.org/gatk/documentation/tooldocs/current/org_broadinstitute_hellbender_tools_walkers_vqsr_VariantRecalibrator.php

VariantRecalibrator is using --recal-file it the example command. However, this option is not available to the tool. Do you mean --output, which is described in the help of the tool as The output recal file used by ApplyRecalibration Required.?

Answers

Sign In or Register to comment.