Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I have VCF file of human genome and the reference genome assembly at hand. I want FASTA
I have VCF file of human genome and the reference genome assembly at hand. I want the sequences in FASTA format. Is there any tool in gatk to help with the task?
In the VCF file I have many number of nucleotide additions in place of a single nucleotide in the reference. I obtained the VCF file from the masterVarBeta file from CGI by using their utilty.