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I have VCF file of human genome and the reference genome assembly at hand. I want FASTA
I have VCF file of human genome and the reference genome assembly at hand. I want the sequences in FASTA format. Is there any tool in gatk to help with the task?
In the VCF file I have many number of nucleotide additions in place of a single nucleotide in the reference. I obtained the VCF file from the masterVarBeta file from CGI by using their utilty.