If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
As a general question, if you are aware of any reference or book for “Genomics for dummies” that explains a bit more about the algorithms used in the GATK pipeline that would be appreciated. I have already watched a lot of videos from the youtube channel: "Variant analysis with GATK course (2017)" but still cannot understand how each algorithm works. Thanks very much!