Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

ApplyRecalibration is missing from GATK4

Command:

~/Tools/gatk-4.0.3.0/gatk ApplyRecalibration

Output:

A USER ERROR has occurred: 'ApplyRecalibration' is not a valid command.

'ApplyRecalibration' is removed from GATK4?

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