VCF2TileDBException : Incorrect cell order found
I am processing an example fastq file, using the best practice pipeline, but getting this error:
terminate called after throwing an instance of 'VCF2TileDBException' what(): VCF2TileDBException : Incorrect cell order found - cells must be in column major order. Previous cell: [ 0, 58999902 ] current cell: [ 0, 58999902 ].
The fastq files are ERR250256 from:
The reference data is from:
I have made some small modifications to the pipelines, necessary to have them run on my backend. These are reflected in the scripts below.
I have attached a bash script replicating the cromwell pipeline, all the above linked files should be in the cwd.