If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Web-based Oncotator server

Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin
edited October 2016 in Oncotator documentation

There is a web-based version of Oncotator which you can use for annotation without running anything on your own machine.

However, please note that the web-based version is an older version, with fewer datasources and many limitations. We urge you to use the downloadable version instead, and at this time we do not provide user support for the web-based version. It is simply provided as-is.

Note also that on rare occasions the server malfunctions and needs to be rebooted. If you experience any server errors (e.g. an error message stating that the server is unavailable), please post a note in the thread below and we'll reboot it as soon as we can.

Post edited by Geraldine_VdAuwera on


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