Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How to now if a Combined vcf file is calibrated with GATK or not
Dear GATK using community
Pardon me for my ignorance, but I am new with using NGS pipelines. I have recieved a combined VCF file or 200 samples. The only information I was able to understand from VCF after opening it in command line and usegalaxy online server the variants are called by using Haplotypecaller of GATK tool. How can I identify that if the variants are only called using haplotypecaller or they were also validated or calibrated afterwards.