How are splice sites annotated?

LeeTL1220LeeTL1220 Arlington, MAMember, Broadie, Dev ✭✭✭

In Oncotator, the variant classification of SPLICE_SITE occurs when a variant is within two bases of a splice site on either the exon or intron side.

To determine whether a specific SPLICE_SITE is exon or intron, and to get the exact variant classification, use the secondary_vc annotation.


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