Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
what's the difference between mutect and GATK-Mutect ?
I do not know the difference between the mutect from http://archive.broadinstitute.org/cancer/cga/mutect and from GATK ?
I find the latest version is 1.14 at the CGA (http://archive.broadinstitute.org/cancer/cga/mutect_download) ,however the version is 2 at GATK.
Is Same ?