We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Details on how Picard-Tools define duplicate reads

fa8@sanger.ac.uk[email protected] Sanger InstituteMember

Dear colleagues,

I am trying to implement a script to group duplicate reads into families and would like to understand which criteria Picard's MarkDuplicates uses. I've read that it compares the 5' ends of reads (either single-end or paired-end), but haven't found much more. Is there any page or publication where these details are provided?



Sign In or Register to comment.