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Quality score

henriettevdzhenriettevdz South Africa Member

I have followed all the steps in the variant discovery part of the guidelines and had to apply hard filters because I'm working on a non-model organism. My question is if you could perhaps help me with how the quality scores that are given in the output, are calculated? Also if you can direct me to more information on what exactly the score means and how it should be used, that will be great.


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