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I would like to know how UnmappedReadFilter identify umapped reads from bam files?
one more thing, the read count is much higher than number of reads i have in the original sam file.So, how mutect2 counts the number of reads?
MicroScheduler - 123005 reads were filtered out during the traversal out of approximately 767207040 total reads
but the original sam file has 30,777,253 reads