We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Input file for intervals argument

apchumangenomicsapchumangenomics University College CorkMember

Hi All, I am currently running MuTect 2 on my files. However, this is taking quite a deal of time per tumour/ normal pair analysis. I have read that using the intervals argument would decrease runtime. However, I am unsure what such a file looks like or where to get one. My data is derived from exome sequencing with exome capture being performed using Sureselect Human All Exon V5. I have downloaded the files: S04380110_AllTracks.bed, S04380110_Covered.bed, S04380110_Padded.bed, S04380110_Regions.bed, S04380110_Targets.txt and S04380110_Regions.bed. Not sure if any of these are correct file to use. Thanks for any help.


Best Answer


Sign In or Register to comment.