Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Quality Score per sample
I didn't find anything in your forum about my question. I'd like to know if you support an annotation, during variant calling on germline experiments, in FORMAT field, to report for each sample a Q-score for ALT allele and not only a QD tag based on cohort in INFO field.
Thank you in advice for your help!