We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

picard sortvcf

when I used GATK tool RealignerTargetCreator to realign my bam file to reference indel vcf files, it reports error that the two files have incompatible contigs. So I used picard ReorderSam and SortVcf to sort bam file and vcf file respectively. The SortVcf command reports error that "SAM dictionaries are not the same". How can I solve this error? thank you


Sign In or Register to comment.