The frontline support team will be unavailable to answer questions until May27th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!
How many "-an" arguments in VariantRecalibrator should be used ?
I encountered a problem when using VariantRecalibrator function of GATK.
The following error often came out when I used the several common “-an” augments.
“##### ERROR MESSAGE: Bad input: Found annotations with zero variance. They must be excluded before proceeding.”
When I decreased the number of “-an”, another error came out.
ERROR MESSAGE: No data found.
I am confused about the “-an” argument. Which of them should be used?