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MESSAGE: Unable to create iterator for rod named variant in GenotypeGVCFs
I tried everything I can do, but can not find the solution. Any help will be appreciated.
GATK version: GATK v3.6-0-g89b7209
-D dbsnp_137.b37.vcf -R human_g1k_v37.fasta
-L CHROM_1_1_.bed -V:VCF indi_1.list
-A BaseQuality RankSumTest
ERROR MESSAGE: Unable to create iterator for rod named variant