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Documentation error in StrandOddsRatio page

There seems to be a documentation error on this page:
https://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_annotator_StrandOddsRatio.php

refRatio and altRatio should be calculated as min/max rather than max/min values. That is what is in code here: https://github.com/broadgsa/gatk-protected/blob/master/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/annotator/StrandOddsRatio.java
assuming the two correspond to each other. I coded it the same way myself and get more precise results too.

Issue · Github
by Sheila

Issue Number
91
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera

Answers

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