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Filtering VCF help
I am trying to Filter the VCF based on two filtering criteria, 1) Coverage >3x and 2) Minimum Allele Frequency should be 12% of this >3x filtered Vaiants.
For the filtering based on coverage I used the expression " --filterExpression " DP >= 3", But my question what would be the suitable expression to get my second filtering done ?
Any help will be great.