If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Is there a gvcf file from 1000 genomes to run a joint call?

Hi, I have 4 low-medium depth genomes and I wold like to use GenotypeGVCFs to call variants jointly of my four genomes along with 1000 genomes data to increase the power of variant detection in my samples. I can't find a gvcf file for 1000 genomes in their website and thought I would ask if a file is available somewhere before I attempt to generate it myself.
Thank you!


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