Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Mutect used in Jaiswal 2014
I am interested in conducting an analysis similar to Jaiswal et al 2014 NEJM using Mutect, and wondering how to do this. In this study, only normal samples are included in the analysis, without matched tumor exome. How is this done in Mutect, if only blood DNA exome is available?