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Regarding the Interval file (-L)

AswathyNAswathyN BangaloreMember

I have an interval file with overlapping records. If i merge those records and take minimum start and maximum end for running the GATK pipeline will it be okay ?
will it have a negative impact in variant calling ?
for eg;
chr1 156700 156754
chr1 156710 156900


chr1 156700 156900

Best Answer


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