Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Minor bug in the generated json doc:

lindenblindenb FranceMember ✭✭

in https://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_variantutils_SelectVariants.php.json

  "summary": "Output variants not called in this comparison track",
      "name": "--discordance",

      "kind": "optional_in",

'kind' should be optional_out isn't it ?

Issue · Github
by Geraldine_VdAuwera

Issue Number
1226
State
closed
Last Updated
Closed By
vdauwera

Best Answers

Answers

  • lindenblindenb FranceMember ✭✭

    got it.
    In the future, it would help to have an extra fileld to tell if an option is an output file or an input file :-)

  • Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin

    That's a fair point, I'll see if I can add that in.

Sign In or Register to comment.