Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Error when run FastaAlternateReferenceMake

richardshi628richardshi628 njMember ✭
in Ask the GATK team

I try to run this command java -jar GenomeAnalysisTK.jar \
-T FastaAlternateReferenceMaker \
-R reference.fasta \
-o output.fasta \
-V input.vcf \

And I get the error MESSAGE: I/O error loading or writing tribble index file for..........

I have two questions, one is why the error occur , another one is the output file is a vcf file ,not fasta file, any reason for that ?

Thanks

· Share on Twitter Share on Google+

Answers

Sign In or Register to comment.