Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Homo_sapiens_assembly19.kown_indels.vcf vs. Mills_and_1000G_gold_standard.indels.hg19.sites.vcf

cullere1cullere1 Boston, MAMember

Have a long standing stable pipeline, which I need to tweak as can be explained and justified.
What is the difference between the old file of known indels (from Mills paper(s)) - Homo_sapiens_assembly19.kown_indels.vcf
And the current version of known indels with 1000G added - Mills_and_1000G_gold_standard.indels.hg19.sites.vcf.gz

I know the newer reference is smaller - just sites. It also has significantly fewer records/line counts. What else was removed or added from the old version until now?

Thanks in advance.

Tagged:

Issue · Github
by Sheila

Issue Number
215
State
closed
Last Updated
Milestone
Array
Closed By
chandrans

Answers

Sign In or Register to comment.